I'm having the same error when building my library's documentation with Github Actions (check here). Can I tell police to wait and call a lawyer when served with a search warrant? Find centralized, trusted content and collaborate around the technologies you use most. Recovering from a blunder I made while emailing a professor. I have tried to install Cairo using the command sudo apt-get install libcairo2-dev but I still get the same error. What happens if you use install.packages("rlang")? installation - How should I deal with "package 'xxx' is not available Find centralized, trusted content and collaborate around the technologies you use most. Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. The R version is not the issue - I have all of those packages installed under 3.6.2. DESeq2 installation Error (ERROR: dependency 'locfit' is not available Installation failure or a non-zero exit status, https://travis-ci.org/github/ramiromagno/gwasrapidd/jobs/740002831, https://packagemanager.rstudio.com/client/#/, init--> Install Errors. Making statements based on opinion; back them up with references or personal experience. Warning message: package (s) not installed when version (s) same as current; use `force = TRUE` to re-install: 'limma' Please help and let me know to find solution. Hisat21.1 , SQLlimitoffset package twitterR is not available (for R version 3.1.0) Ah, I get it now. From searching I managed to install RCurl but I still get the bellow error. CRAN - Package locfit See also Names of R's available packages, ?available.packages. Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Perhaps you should add the directory containing `fribidi.pc. Suspected that this was the case. I tried to install pkgdown via devtools fresh on a new OS X (Catalina) machine, but the installation seems to fail (non-zero exit status) with error implications for packages such as freetype2 and systemfonts, even with dependencies set: The text was updated successfully, but these errors were encountered: The error message from {systemfonts} suggests that you need to install the freetype2 library on your machine: If you don't have homebrew, I would suggest to install it (https://brew.sh/) and then run brew install freetype from your terminal. OOOh really! same issue today with renv::install("pkgdown") and install.packages("pkgdown") persisted after conda install -c anaconda fribidi. Try no and compare results. package "makeR" is not available (for version 3.0.2) RNA-seq: problems with edgeR installation - Bioconductor You may get a warning: dependencies 'xyz' not available for the package ,then first install those from the repository and then do steps 3-4 what is wrong and how should I handle it ? I had the same problem (on Linux) which could be solved changing the proxy settings. It may have a repository on GitHub/Bitbucket/Gitorious. By clicking Sign up for GitHub, you agree to our terms of service and Good to know @hadley Thanks for reaching back so quick! Package names are case sensitive in R. 2. Reverse dependencies: Reverse depends: abc, antiProfiles, bumphunter, . A concrete example: the latest CRAN version of package rattle for data mining, 5.3.0, does not support R version 3.4 because it had a big update between package versions 5.2.0 (R >= 2.13.0) and 5.3.0 (R >=3.5). I have had the same problem on Mac (R version 3.2.2) and Ubuntu (R version 3.0.2) and in both instances it was resolved simply by running this before the install.packages command. Rbbg). Not the answer you're looking for? is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: -------------------------- [ERROR MESSAGE] ---------------------------, --------------------------------------------------------------------, ERROR: configuration failed for package systemfonts, * removing /usr/local/lib/R/4.0/site-library/systemfonts, installation of package systemfonts had non-zero exit status, ERROR: dependency systemfonts is not available for package textshaping, * removing /usr/local/lib/R/4.0/site-library/textshaping, installation of package textshaping had non-zero exit status, ERROR: dependencies systemfonts, textshaping are not available for package ragg, * removing /usr/local/lib/R/4.0/site-library/ragg, installation of package ragg had non-zero exit status, ERROR: dependency ragg is not available for package pkgdown, * removing /usr/local/lib/R/4.0/site-library/pkgdown, installation of package pkgdown had non-zero exit status, (converted from warning) installation of package systemfonts had non-zero exit status. How do I remove packages installed with Python's easy_install? Thanks a lot Mensur Dlakic ! At first I had about 10 errors regarding packages I couldnt install. Is there a single-word adjective for "having exceptionally strong moral principles"? How to use Slater Type Orbitals as a basis functions in matrix method correctly? --N To subscribe to this RSS feed, copy and paste this URL into your RSS reader. It only takes a minute to sign up. ), same here: Unfortunately I'm not able to install "edgeR", I've looking for any possible solution but i hasn't success, I would be really thankful for any kind of help. Linear regulator thermal information missing in datasheet, Find the package you want to install with, Determine which version you want to install. There is no source version of the package, Although the binary version of your package is available, the source version is not. By clicking Sign up for GitHub, you agree to our terms of service and Below are the commands I have run and the respective outputs: To verify the proper installation of Cairo: You are probably do not want to read the messages which are shown during compilation. Linear regulator thermal information missing in datasheet. Hello everybody! This should fix the issue. package ImpulseDE2 is not available for Bioconductor version '3.14', A version of this package for your version of R might be available elsewhere, I changed the Action file to run install.packages("pkgdown") instead of remotes::install_dev("pkgdown") as I needed the site to be updated today. Your package is in a non-standard repository (e.g. Disconnect between goals and daily tasksIs it me, or the industry? The first thing to test is have you spelled the name of the package correctly? The Cairo package also requires X11/Intrinsic.h from libxt-dev package. Cloning the repository woudnt do it either. Follow Up: struct sockaddr storage initialization by network format-string. Have a question about this project? Bulk update symbol size units from mm to map units in rule-based symbology. The packages include: broom, tidyr, tidyselect, vctrs, and rlang. (Of course, you may need to install.packages("installr") first.). Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Will Gnome 43 be included in the upgrades of 22.04 Jammy? limit n offset m mm 2 Answers Sorted by: 1 Bioconductor is a package management tool for R that allows you to install the appropriate package versions for your R version. hello, thanks for helping! Can Martian regolith be easily melted with microwaves? What is the point of Thrower's Bandolier? In RStudio, go to the "Packages" tab and remove all the packages (click on the x) raising the "red-flags" in the required updates. How would "dark matter", subject only to gravity, behave? For the Nozomi from Shinagawa to Osaka, say on a Saturday afternoon, would tickets/seats typically be available - or would you need to book? Linear regulator thermal information missing in datasheet. You didn't look in the right repository, Next, you should check to see if the package is available. limit From searching I managed to install RCurl but I still get the bellow error. To learn more, see our tips on writing great answers. For the Nozomi from Shinagawa to Osaka, say on a Saturday afternoon, would tickets/seats typically be available - or would you need to book? Learn more about Teams package syncwave/mvcwt is not available (for R version 3.0.2) Have a question about this project? How do I align things in the following tabular environment? Assuming that it is reasonably compliant with CRAN standards, you can still download it using install.packages; you just have to specify the repository URL. Edit (04/08/2020): I recently had an issue with a package (XML) reportedly not available for my R version (3.6.3, latest supported on Debian stretch), after an update of the package in CRAN. It is common to be confused about the difference between a package and a library, or a package and a dataset. If you are behind a proxy server check the configuration using Sys.getenv("http_proxy") within R. Sign in Otherwise, you will need to set up Rtools in order to install from source. Differential expression analysis of RNA-seq expression profiles with biological replication. Post questions about Bioconductor As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce read counts, including ChIP-seq, ATAC-seq, Bisulfite-seq, SAGE and CAGE. Does this help you https://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source? If you want to install it: install.packages ("TSA") If you already have .tar.gz files. Installing package into C:/Users/dimarcantonio/Documents/R/win-library/3.2 By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. I am trying to install the R package ComplexHeatmap but I keep getting the error message that the the dependency Cairo is not available. Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. There seems to be a problem with some versions of R and libcurl. Did this satellite streak past the Hubble Space Telescope so close that it was out of focus? The problem was not the version of R, it was the repos parameter. How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning? BEGIN Author Anirban166 on Oct 29, 2020 edited Thanks @zkamvar, I have homebrew and that worked for freetype. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? https://travis-ci.org/github/ramiromagno/gwasrapidd/jobs/740002831. It appears to be a bug in r-studio however. 11. Why did Ukraine abstain from the UNHRC vote on China? You can select a different mirror with chooseCRANmirror() and try the installation again. ERROR: dependency 'rlang' is not available for package 'dbplyr'. Alternatively, the list of available packages can be seen in a browser for CRAN, CRAN (extras), Bioconductor, R-forge, RForge, and GitHub. Hello everybody! Can I tell police to wait and call a lawyer when served with a search warrant? ERROR: dependency 'locfit' is not available for package 'DESeq2' locfit1.5-9.2 #R install.packages('https://cran.r-project.org/src/contrib/Archive/locfit/locfit_1.5-9.2.tar.gz',repos = NULL) 1 2 DEseq2edgeR As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that . Sign in But it still does not work. Will Gnome 43 be included in the upgrades of 22.04 Jammy? I suggest using Hadley Wickham's devtools package. guide. I got "package is not available" By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. limit n,mnm Try installing: * deb: libfontconfig1-dev (Debian, Ubuntu, etc), If --static freetype2 is already installed, check that, PATH and PKG_CONFIG_PATH contains a --static freetype2.pc file. In my ~/.Renviron I had the following lines (from https://support.rstudio.com/hc/en-us/articles/200488488-Configuring-R-to-Use-an-HTTP-or-HTTPS-Proxy) causing the problem: solved the problem. package diamonds is not available (for R version 3.0.0) How Intuit democratizes AI development across teams through reusability. I am trying to install DESeq2 and I keep getting errors. Would the magnetic fields of double-planets clash? If you are into extreme makeovers, upgrading your R to the latest version could work as well. This worked for me in R 4.2.1 on Windows. AC Op-amp integrator with DC Gain Control in LTspice, Linear Algebra - Linear transformation question. Done libcairo2-dev is already the newest version (1.16.0-4ubuntu1). By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Have a question about this project? One thing that happened for me is that the version of R provided by my linux distribution (R version 3.0.2 provided by Ubuntu 14.04) was too old for the latest version of the package available on CRAN (in my case, plyr version 1.8.3 as of today). from the parent directory of DESCRIPTION) e.g. To see which repositories R will look in for your package, and optionally select some additional ones. Asking for help, clarification, or responding to other answers. Policy. Author: Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth, Maintainer: Yunshun Chen
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